Versatile fungal transformation vectors carrying the selectable bar gene of Streptomyces hygroscopicus

Several selectable genes have been reported for construction of filamentous fungal transformation vectors. Among the most widely used is the hygB (also known as hph) gene of E. coli, which is generally useful because the corresponding selective agent (hygromycin B) is toxic to wild type strains of many fungi and because scoring of transformants is usually unambiguous. We, and others (Avalos et al. 1989 Curr. Genet. 16:369-372), have found that the same merits are evident using bialaphos (or phosphinothricin) as a selective agent and the bar gene (DeBlock et al. 1987 EMBO J. 6:2513-2518), which encodes phosphinothricin acetyltransferase, as a selectable marker. We report here the construction of three vectors which carry bar as the selectable gene and have easily exchangeable parts as well as convenient cloning sites. Creative Commons License This work is licensed under a Creative Commons Attribution-Share Alike 4.0 License. This regular paper is available in Fungal Genetics Reports: http://newprairiepress.org/fgr/vol39/iss1/15 Versatile fungal transformation vectors carrying the selectable bar gene of Streptomyces hygroscopicus B. Straubinger(1), E. Straubinger(1), S. Wirsel, G. Turgeon and O. Yoder Department of Plant Pathology, Cornell University, Ithaca NY 14853. (1)Current address: Consortium f. Elektrochem. Industrie GmbH, Zielstattstr. 20, D-8000 München 70, Germany Several selectable genes have been reported for construction of filamentous fungal transformation vectors. Among the most widely used is the hygB (also known as hph) gene of E. coli, which is generally useful because the corresponding selective agent (hygromycin B) is toxic to wild type strains of many fungi and because scoring of transformants is usually unambiguous. We, and others (Avalos et al. 1989 Curr. Genet. 16:369-372), have found that the same merits are evident using bialaphos (or phosphinothricin) as a selective agent and the bar gene (DeBlock et al. 1987 EMBO J. 6:2513-2518), which encodes phosphinothricin acetyltransferase, as a selectable marker. We report here the construction of three vectors which carry bar as the selectable gene and have easily exchangeable parts as well as convenient cloning sites. The first plasmid (pBP1) was constructed as follows. A 575 bp BamHI fragment carrying the bar coding region was inserted into the BamHI site of pUC18 (Yanish-Perron et al. 1985 Gene 33:103). A 631 bp SalI-DdeI fragment carrying the Cochliobolus heterostrophus Promoter 1 element (Turgeon et al. 1987 Mol. Cell. Biol. 7:3297-3305) was end-filled, attached to XbaI linkers, and inserted into the pUC18 XbaI site immediately 5' of the BamHI site, thus creating a Promoter 1::bar transcriptional fusion (Fig. 1). The second plasmid (pBP1T) was made by inserting a 470 bp AccI fragment (blunt-ended and attached to EcoRI linkers) from the 3' untranslated region of the C. heterostrophus TRP1 gene (Turgeon et al. 1986 Gene 42:79-88) into the EcoRI site of pBP1, thus providing a fungal terminator (Fig. 1). The junction regions were sequenced as shown below: Restriction enzyme sites are underlined or overlined. Linker and vector sequences are in lower case letters. The 3' end of the Promoter 1 (P1) fragment is shown fused to the XbaI linker. Both ends of the BamHI fragment carrying the bar gene are shown (internal sequences are omitted); the start codon is in bold type. The 5' end of the TRP1 terminator fragment is shown fused to the EcoRI linker. Published by New Prairie Press, 2017 Figure 1. Construction of plasmids pBP1, pBP1T and pBG. Steps in construction are described in the text. Restriction enzyme sites shown are either unique (for cloning) or points at which the sequences indicated in the text were inserted. amp = E. coli ampicillin resistance gene; ori = E. coli origin of replication; P1 = C. heterostrophus Promoter 1; bar = E. coli bialaphos resistance gene coding region; TRP1 = C. heterostrophus tryptophan biosynthetic gene terminator; GPD1 = C. heterostrophus glyceraldehyde-3-phosphate dehydrogenase gene promoter. An important feature of these plasmids is that their relevant parts (promoter, coding region, terminator) can be readily removed or exchanged with other sequences, simply by digestion with the appropriate enzyme (XbaI, BamHI or EcoRI) and religation with or without a substitute fragment attached to the proper linkers. Note that some of the unused polylinker sites of pUC18 are no longer unique because they are also found in one or more of the inserts. Remaining cloning sites are EcoRI, SmaI, SacI and HindIII for pBP1 and HindIII only for pBP1T. The third plasmid (pBG) was made by inserting the 575 bp BamHI bar fragment into the BamHI site in the polylinker of the Bluescript vector pIIKS+. A 675 bp HindIII-MseI fragment bearing the promoter of the C. heterostrophus GPD1 gene (VanWert and Yoder 1992 Curr. Genet. in press), was end-filled and inserted into the SmaI site of pIIKS+, just 5' of the bar gene, thus creating a GPD1 promoter::bar transcriptional fusion (Fig. 1). A combination of sequencing and restriction enzyme analysis confirmed the junction regions as shown below. Conventions are as described above for pBP1T. Restriction enzyme sites in parentheses are nonfunctional. All three plasmids were used to transform C. heterostrophus, using standard procedures (Turgeon et al. 1987 Mol. Cell. Biol. 7:3297-3305). The protoplast regeneration medium for http://newprairiepress.org/fgr/vol39/iss1/15 DOI: 10.4148/1941-4765.1441 selection of transformants was modified to contain only osmoticum and Cochliobolus minimal salts (Leach et al. 1982 J. Gen. Microbiol. 128:1719-1729), solidified with 1% agarose and containing either bialaphos or phosphinothricin at a final concentration of 50-100 ug/ml. Complex media were avoided since phosphinothricin (a synthetic compound also known as glufosinate-ammonium, an analog of L-glutamic acid) specifically inhibits glutamine synthetase. Bialaphos, a naturally-occurring tripeptide consisting of phosphinothricin and two residues of Lalanine, is toxic to cells after it is converted to phosphinothricin by endogenous cellular peptidases which remove its L-alanine residues. The transformation frequency with each of the plasmids was 1-10 fast-growing and 50-500 slowgrowing colonies/ug plasmid DNA, comparable to the frequencies obtained using similar plasmids but with the hygB gene substituted for bar. Integration of either pBP1 or pBP1T into chromosomal DNA occurred at both Promoter 1 and at ectopic sites. Single and multiple plasmid copies were observed at either type of site. When transformants were crossed to wild type, the bar gene segregated as a single mendelian element, indicating that integration occurred at a single site in each case. pBP1 and pBP1T were also used to transform Colletotrichum graminicola, using procedures similar to those described for C. heterostrophus. Acknowledgements: The bar gene, in plasmid pGSFR1, was obtained from Plant Genetic Systems N.V., Laboratories Gent, Jozef Plateaustraat 22, B-9000 Gent, Belgium. Phosphinothricin was from Riedel de Haen AG, Wunstorferstrasse 40, D-3016 Seelze 1, Germany and bialaphos was from Meiji Seika Kaisha, Ltd., Research Laboratories, MorookaCho, Kohoku-ku, Yokohama 222, Japan. The work was funded by grants from the U.S. Department of Agriculture and the Cornell Biotechnology Program; B.S. and S.W. were supported by fellowships from the Deutsche Forschungsgemeinschaft. Published by New Prairie Press, 2017


Versatile fungal transformation vectors carrying the selectable bar gene of
Several selectable genes have been reported for construction of filamentous fungal transformation vectors. Among the most widely used is the hygB (also known as hph) gene of E. coli, which is generally useful because the corresponding selective agent (hygromycin B) is toxic to wild type strains of many fungi and because scoring of transformants is usually unambiguous. We, and others (Avalos et al. 1989 Curr. Genet. 16:369-372), have found that the same merits are evident using bialaphos (or phosphinothricin) as a selective agent and the bar gene (DeBlock et al. 1987EMBO J. 6:2513-2518, which encodes phosphinothricin acetyltransferase, as a selectable marker. We report here the construction of three vectors which carry bar as the selectable gene and have easily exchangeable parts as well as convenient cloning sites. The first plasmid (pBP1) was constructed as follows. A 575 bp BamHI fragment carrying the bar coding region was inserted into the BamHI site of pUC18 (Yanish-Perron et al. 1985 Gene 33:103). A 631 bp SalI-DdeI fragment carrying the Cochliobolus heterostrophus Promoter 1 element (Turgeon et al. 1987 Mol. Cell. Biol. 7:3297-3305) was end-filled, attached to XbaI linkers, and inserted into the pUC18 XbaI site immediately 5' of the BamHI site, thus creating a Promoter 1::bar transcriptional fusion (Fig. 1). The second plasmid (pBP1T) was made by inserting a 470 bp AccI fragment (blunt-ended and attached to EcoRI linkers) from the 3' untranslated region of the C. heterostrophus TRP1 gene (Turgeon et al. 1986 Gene 42:79-88) into the EcoRI site of pBP1, thus providing a fungal terminator (Fig. 1). The junction regions were sequenced as shown below: Restriction enzyme sites are underlined or overlined. Linker and vector sequences are in lower case letters. The 3' end of the Promoter 1 (P1) fragment is shown fused to the XbaI linker. Both ends of the BamHI fragment carrying the bar gene are shown (internal sequences are omitted); the start codon is in bold type. The 5' end of the TRP1 terminator fragment is shown fused to the EcoRI linker. An important feature of these plasmids is that their relevant parts (promoter, coding region, terminator) can be readily removed or exchanged with other sequences, simply by digestion with the appropriate enzyme (XbaI, BamHI or EcoRI) and religation with or without a substitute fragment attached to the proper linkers. Note that some of the unused polylinker sites of pUC18 are no longer unique because they are also found in one or more of the inserts. Remaining cloning sites are EcoRI, SmaI, SacI and HindIII for pBP1 and HindIII only for pBP1T.
The third plasmid (pBG) was made by inserting the 575 bp BamHI bar fragment into the BamHI site in the polylinker of the Bluescript vector pIIKS+. A 675 bp HindIII-MseI fragment bearing the promoter of the C. heterostrophus GPD1 gene (VanWert and Yoder 1992 Curr. Genet. in press), was end-filled and inserted into the SmaI site of pIIKS+, just 5' of the bar gene, thus creating a GPD1 promoter::bar transcriptional fusion (Fig. 1). A combination of sequencing and restriction enzyme analysis confirmed the junction regions as shown below.
Conventions are as described above for pBP1T. Restriction enzyme sites in parentheses are nonfunctional.
All three plasmids were used to transform C. heterostrophus, using standard procedures (Turgeon et al. 1987 Mol. Cell. Biol. 7:3297-3305). The protoplast regeneration medium for selection of transformants was modified to contain only osmoticum and Cochliobolus minimal salts (Leach et al. 1982J. Gen. Microbiol. 128:1719-1729, solidified with 1% agarose and containing either bialaphos or phosphinothricin at a final concentration of 50-100 ug/ml. Complex media were avoided since phosphinothricin (a synthetic compound also known as glufosinate-ammonium, an analog of L-glutamic acid) specifically inhibits glutamine synthetase. Bialaphos, a naturally-occurring tripeptide consisting of phosphinothricin and two residues of Lalanine, is toxic to cells after it is converted to phosphinothricin by endogenous cellular peptidases which remove its L-alanine residues.
The transformation frequency with each of the plasmids was 1-10 fast-growing and 50-500 slowgrowing colonies/ug plasmid DNA, comparable to the frequencies obtained using similar plasmids but with the hygB gene substituted for bar. Integration of either pBP1 or pBP1T into chromosomal DNA occurred at both Promoter 1 and at ectopic sites. Single and multiple plasmid copies were observed at either type of site. When transformants were crossed to wild type, the bar gene segregated as a single mendelian element, indicating that integration occurred at a single site in each case. pBP1 and pBP1T were also used to transform Colletotrichum graminicola, using procedures similar to those described for C. heterostrophus.